User profiles for "author:Hongzhe Li"
Hongzhe Li, PhDUniversity of Pennsylvania Verified email at upenn.edu Cited by 36832 |
Microbiome, metagenomics, and high-dimensional compositional data analysis
H Li - Annual Review of Statistics and Its Application, 2015 - annualreviews.org
The human microbiome is the totality of all microbes in and on the human body, and its
importance in health and disease has been increasingly recognized. High-throughput …
importance in health and disease has been increasingly recognized. High-throughput …
Isolation and characterization of primary bone marrow mesenchymal stromal cells
H Li, R Ghazanfari, D Zacharaki… - Annals of the New …, 2016 - Wiley Online Library
Bone marrow (BM) contains a rare population of mesenchymal stromal cells (MSCs), which
have been characterized as nonhematopoietic skeletal progenitor cells with central …
have been characterized as nonhematopoietic skeletal progenitor cells with central …
[HTML][HTML] Emerging priorities for microbiome research
CM Cullen, KK Aneja, S Beyhan, CE Cho… - Frontiers in …, 2020 - frontiersin.org
Microbiome research has increased dramatically in recent years, driven by advances in
technology and significant reductions in the cost of analysis. Such research has unlocked a …
technology and significant reductions in the cost of analysis. Such research has unlocked a …
Linking long-term dietary patterns with gut microbial enterotypes
Diet strongly affects human health, partly by modulating gut microbiome composition. We
used diet inventories and 16 S rDNA sequencing to characterize fecal samples from 98 …
used diet inventories and 16 S rDNA sequencing to characterize fecal samples from 98 …
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
RA Koeth, Z Wang, BS Levison, JA Buffa, E Org… - Nature medicine, 2013 - nature.com
Intestinal microbiota metabolism of choline and phosphatidylcholine produces
trimethylamine (TMA), which is further metabolized to a proatherogenic species …
trimethylamine (TMA), which is further metabolized to a proatherogenic species …
The human gut virome: inter-individual variation and dynamic response to diet
Immense populations of viruses are present in the human gut and other body sites.
Understanding the role of these populations (the human “virome”) in health and disease …
Understanding the role of these populations (the human “virome”) in health and disease …
Associating microbiome composition with environmental covariates using generalized UniFrac distances
Motivation: The human microbiome plays an important role in human disease and health.
Identification of factors that affect the microbiome composition can provide insights into …
Identification of factors that affect the microbiome composition can provide insights into …
[HTML][HTML] Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
Diet influences health as a source of nutrients and toxins, and by shaping the composition of
resident microbial populations. Previous studies have begun to map out associations …
resident microbial populations. Previous studies have begun to map out associations …
[PDF][PDF] Inflammation, antibiotics, and diet as environmental stressors of the gut microbiome in pediatric Crohn's disease
JD Lewis, EZ Chen, RN Baldassano, AR Otley… - Cell host & …, 2015 - cell.com
Abnormal composition of intestinal bacteria—" dysbiosis"—is characteristic of Crohn's
disease. Disease treatments include dietary changes and immunosuppressive anti-TNFα …
disease. Disease treatments include dietary changes and immunosuppressive anti-TNFα …
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
L Albenberg, TV Esipova, CP Judge, K Bittinger… - Gastroenterology, 2014 - Elsevier
Background & Aims The gut microbiota is a complex and densely populated community in a
dynamic environment determined by host physiology. We investigated how intestinal oxygen …
dynamic environment determined by host physiology. We investigated how intestinal oxygen …